species:   Opsin
pid:       PID1954
parent:    n_os_milR_66
paralog:   
locus:     JAAVMX010000005.1:2913114-2913239
matures:   ['UACGGCUCGCCUGUAUAGUUCU', 'AAUCCGUAGAAAGAGUGUAUA']
srr:       SRR12952906
genome:    /Users/jax/+Genomes/Fungal_genomes/Opsin.GCA_012934285.1_ASM1293428v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zhang2021-wd.SRR12952906.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zhang2021-wd.SRR12952906.cram JAAVMX010000005.1:2913114-2913239

0 out of bounds
45 alignments
45 proper strand
1 stranded perfect matches

  ***********************                                                                           ************************  
GGUAAGAAUCCGUAGAAAGAGUGUAUAAAAAUAGCCUAGCCGGGCUUUAACUAUAUAAUAUACGUCCGUAAAGAUAUAGACCUUAUUAUCGAGAAUAUUAUACGGCUCGCCUGUAUAGUUCUUACC
(((((((((..(((.(..((((((((((....(((((....)))))....((((((....(((....)))...))))))..(((......)))....)))))).))))...).))).)))))))))
----------------------------------------------------------------------------------------------------UACGGCUCGCCUGUAUAGUUCU---- l=22 a=0 c
------AAUCCGUAGAAAGAGUGUAUA--------------------------------------------------------------------------------------------------- l=21 a=0 c*
------------------------------------------------------------------------------------------------------CGGCUCGCCUGUAUAGUUCUUA-- l=22 a=1 ma
----AGAAUCCGUAGAAAGAGUGUA----------------------------------------------------------------------------------------------------- l=21 a=0 ma*

------------------------------------------------------------------------------------------------------CGGCUCGCCUGUAUAGUUCUUA-- l=22 a=1 (ma)
----------------------------------------------------------------------------------------------------UcCGGCUCGCCUGUAUAGUUCU---- l=22 a=1 
----------------------------------------------------------------------------------------------------UcCGGCUCGCCUGUAUAGUUCUUA-- l=24 a=43 

mb-01011
ax-1001011
ku-01
ss-110111101100
fn-011
